Differential Expressed Windows Based on Negative Binomial Distribution


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Documentation for package ‘DEWSeq’ version 1.6.0

Help Pages

DESeqDataSetFromSlidingWindows create DESeq data object
extractRegions extract significant regions
resultsDEWSeq extract DEWseq results
slbpDds ENCODE eCLIP data SLBP in K562
slbpRegions ENCODE eCLIP data SLBP in K562
slbpVst ENCODE eCLIP data SLBP in K562
slbpWindows ENCODE eCLIP data SLBP in K562
SLBP_K562_w50s20 ENCODE eCLIP data for SLBP in K562, low count filtered
toBED windows/regions to BED
topWindowStats stats for the top windows in each region