scTGIF

DOI: 10.18129/B9.bioc.scTGIF    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see scTGIF.

Cell type annotation for unannotated single-cell RNA-Seq data

Bioconductor version: 3.12

scTGIF connects the cells and the related gene functions without cell type label.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("scTGIF")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scTGIF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scTGIF")

 

HTML R Script scTGIF
PDF   Reference Manual
Text   NEWS

Details

biocViews DimensionReduction, GeneExpression, QualityControl, SingleCell, Software
Version 1.4.0
In Bioconductor since BioC 3.10 (R-3.6) (1.5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
LinkingTo
Suggests testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me scTensor
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scTGIF_1.4.0.tar.gz
Windows Binary scTGIF_1.4.0.zip
macOS 10.13 (High Sierra) scTGIF_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scTGIF
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scTGIF
Package Short Url https://bioconductor.org/packages/scTGIF/
Package Downloads Report Download Stats

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