DOI: 10.18129/B9.bioc.netReg    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see netReg.

Network-Regularized Regression Models

Bioconductor version: 3.12

netReg fits linear regression models using network-penalization. Graph prior knowledge, in the form of biological networks, is being incorporated into the loss function of the linear model. The networks describe biological relationships such as co-regulation or dependency of the same transcription factors/metabolites/etc. yielding a part sparse and part smooth solution for coefficient profiles.

Author: Simon Dirmeier [aut, cre]

Maintainer: Simon Dirmeier <simon.dirmeier at>

Citation (from within R, enter citation("netReg")):


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biocViews FeatureExtraction, GraphAndNetwork, Network, Regression, Software, StatisticalMethod
Version 1.14.0
In Bioconductor since BioC 3.5 (R-3.4) (4 years)
License GPL-3
Depends R (>= 3.4), tensorflow (>= 1.14.0), tfprobability (>= 0.7.0)
Imports Rcpp, stats, reticulate, nloptr, methods
LinkingTo Rcpp, RcppArmadillo
Suggests BiocStyle, testthat, knitr, rmarkdown, lintr, styler, LaplacesDemon, grplasso
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me
Links To Me
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