DOI: 10.18129/B9.bioc.RcwlPipelines    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see RcwlPipelines.

Bioinformatics pipelines based on Rcwl

Bioconductor version: 3.12

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Rcwl Pipelines
PDF   Reference Manual
Text   NEWS


biocViews Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Version 1.6.2
In Bioconductor since BioC 3.9 (R-3.6) (2 years)
License GPL-2
Depends R (>= 3.6), Rcwl, BiocFileCache
Imports rappdirs, methods, utils
Suggests testthat, knitr, rmarkdown, BiocStyle, dplyr
SystemRequirements nodejs
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RcwlPipelines_1.6.2.tar.gz
Windows Binary
macOS 10.13 (High Sierra) RcwlPipelines_1.6.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/RcwlPipelines
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcwlPipelines
Package Short Url https://bioconductor.org/packages/RcwlPipelines/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: