DOI: 10.18129/B9.bioc.OmicsMarkeR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OmicsMarkeR.

Classification and Feature Selection for 'Omics' Datasets

Bioconductor version: 3.12

Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.

Author: Charles E. Determan Jr. <cdetermanjr at>

Maintainer: Charles E. Determan Jr. <cdetermanjr at>

Citation (from within R, enter citation("OmicsMarkeR")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


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biocViews Classification, FeatureExtraction, Metabolomics, Software
Version 1.22.0
In Bioconductor since BioC 3.1 (R-3.2) (6 years)
License GPL-3
Depends R (>= 3.2.0)
Imports graphics, stats, utils, plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1)
Suggests testthat, BiocStyle, knitr
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