compare_signatures-HierarchicalPartition-method {cola}R Documentation

Compare Signatures from Different Nodes

Description

Compare Signatures from Different Nodes

Usage

## S4 method for signature 'HierarchicalPartition'
compare_signatures(object, depth = max_depth(object),
    method = c("euler", "upset"), verbose = interactive(), ...)

Arguments

object

A HierarchicalPartition-class object.

depth

Depth of the hierarchy.

method

Method to visualize.

verbose

Whether to print message.

...

Other arguments passed to get_signatures,HierarchicalPartition-method.

Details

It plots an Euler diagram or a UpSet plot showing the overlap of signatures from different nodes. On each node, the number of subgroups is inferred by suggest_best_k,ConsensusPartition-method.

Examples

data(golub_cola_rh)
compare_signatures(golub_cola_rh)

[Package cola version 1.6.0 Index]