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| bsseq_to_edger | Convert BSseq object to edgeR methylation matrix |
| bsseq_to_log_methy_ratio | Convert BSseq object to log-methylation-ratio matrix |
| create_tabix_file | Create a tabix file using methylation calls |
| exons-method | Nanopore Methylation Result |
| get_exons_homo_sapiens | Get exon annotations for homo sapiens |
| get_exons_mus_musculus | Get exon annotations for mus musculus |
| load_example_nanomethresult | Load an example NanoMethResult object |
| methy-method | Nanopore Methylation Result |
| methy_col_names | Column names for methylation data |
| methy_to_bsseq | Create BSSeq object from methylation tabix file |
| NanoMethResult | Nanopore Methylation Result |
| NanoMethResult-class | Nanopore Methylation Result |
| plot_agg_regions | Plot aggregate regions |
| plot_agg_regions_sample_grouped | Plot aggregate regions with grouped samples |
| plot_gene | Plot gene |
| plot_gene-method | Plot gene |
| plot_grange | Plot GRanges |
| plot_region | Plot region |
| plot_region-method | Plot region |
| query_exons | Query exons |
| query_exons_gene_id | Query exons |
| query_exons_region | Query exons |
| query_exons_symbol | Query exons |
| query_methy | Query methylation data |
| samples-method | Nanopore Methylation Result |