## ---- include=FALSE----------------------------------------------------------- library(BiocStyle) ## ---- eval=FALSE-------------------------------------------------------------- # if (!requireNamespace("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # BiocManager::install("scDblFinder") # # # or, to get that latest developments: # BiocManager::install("plger/scDblFinder") ## ----------------------------------------------------------------------------- # we create a dummy dataset sce <- scater::mockSCE(ncells=500, ngenes=500) library(scDblFinder) sce <- scDblFinder(sce, verbose=FALSE) ## ---- eval=FALSE-------------------------------------------------------------- # library(BiocParallel) # sce <- scDblFinder(sce, samples="sample_id", BPPARAM=MulticoreParam(3)) # table(sce$scDblFinder.class) ## ----echo=FALSE, fig.cap="Comparison with other tools; note that doubletFinder failed on the mixology10x3cl dataset."---- knitr::include_graphics(system.file('docs', 'scDblFinder_comparison.png', package='scDblFinder'))