It is a R wrapper for the docker app (https://hub.docker.com/r/wjiang2/gs-to-flowjo)
gatingset_to_flowjo( gs, outFile, showHidden = FALSE, docker_img = "wjiang2/gs-to-flowjo", ... )
gs | a GatingSet object or a folder contains the GatingSet archive (generated by previous |
---|---|
outFile | the workspace file path to write |
docker_img | the docker image that does the actual work |
... | other arguments passed to |
nothing
if (FALSE) { library(flowWorkspace) path <- system.file("extdata",package="flowWorkspaceData") gs_path <- list.files(path, pattern = "gs_manual",full = TRUE) gs <- load_gs(gs_path) #output to flowJo outFile <- tempfile(fileext = ".wsp") gatingset_to_flowjo(gs, outFile) #or directly use the archive as the input (to avoid the extra copying inside of the wrapper) gatingset_to_flowjo(gs_path, outFile) }