It is a R wrapper for the docker app (https://hub.docker.com/r/wjiang2/gs-to-flowjo)

gatingset_to_flowjo(
  gs,
  outFile,
  showHidden = FALSE,
  docker_img = "wjiang2/gs-to-flowjo",
  ...
)

Arguments

gs

a GatingSet object or a folder contains the GatingSet archive (generated by previous save_gs call)

outFile

the workspace file path to write

docker_img

the docker image that does the actual work

...

other arguments passed to save_gs

Value

nothing

Examples

if (FALSE) { library(flowWorkspace) path <- system.file("extdata",package="flowWorkspaceData") gs_path <- list.files(path, pattern = "gs_manual",full = TRUE) gs <- load_gs(gs_path) #output to flowJo outFile <- tempfile(fileext = ".wsp") gatingset_to_flowjo(gs, outFile) #or directly use the archive as the input (to avoid the extra copying inside of the wrapper) gatingset_to_flowjo(gs_path, outFile) }