rWikiPathways

DOI: 10.18129/B9.bioc.rWikiPathways    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see rWikiPathways.

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: 3.11

Use this package to interface with the WikiPathways API.

Author: Egon Willighagen [aut, cre] , Alex Pico [aut]

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Citation (from within R, enter citation("rWikiPathways")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rWikiPathways")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")

 

HTML R Script 1. Overview
HTML R Script 2. rWikiPathways and BridgeDbR
HTML R Script 3. rWikiPathways and RCy3
HTML R Script 4. Pathway Analysis
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization
Version 1.8.5
In Bioconductor since BioC 3.7 (R-3.5) (2.5 years)
License MIT + file LICENSE
Depends
Imports httr, utils, XML, rjson, data.table, tidyr
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/wikipathways/rwikipathways
BugReports https://github.com/wikipathways/rwikipathways/issues
Depends On Me
Imports Me NoRCE
Suggests Me TRONCO
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rWikiPathways_1.8.5.tar.gz
Windows Binary rWikiPathways_1.8.5.zip
macOS 10.13 (High Sierra) rWikiPathways_1.8.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/rWikiPathways
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rWikiPathways
Package Short Url https://bioconductor.org/packages/rWikiPathways/
Package Downloads Report Download Stats

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