netresponse

DOI: 10.18129/B9.bioc.netresponse    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see netresponse.

Functional Network Analysis

Bioconductor version: 3.11

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("netresponse")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netresponse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netresponse")

 

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Details

biocViews CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription
Version 1.48.0
In Bioconductor since BioC 2.7 (R-2.12) (10 years)
License GPL (>=2)
Depends R (>= 2.15.1), Rgraphviz, methods, minet, mclust, reshape2
Imports dmt, ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL https://github.com/antagomir/netresponse
BugReports https://github.com/antagomir/netresponse/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netresponse_1.48.0.tar.gz
Windows Binary netresponse_1.48.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) netresponse_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/netresponse
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netresponse
Package Short Url https://bioconductor.org/packages/netresponse/
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