flowFit

DOI: 10.18129/B9.bioc.flowFit    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see flowFit.

Estimate proliferation in cell-tracking dye studies

Bioconductor version: 3.11

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author: Davide Rambaldi

Maintainer: Davide Rambaldi <davide.rambaldi at gmail.com>

Citation (from within R, enter citation("flowFit")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowFit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowFit")

 

PDF R Script Fitting Functions for Flow Cytometry Data
PDF   Reference Manual

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version 1.25.0
In Bioconductor since BioC 2.13 (R-3.0) (7 years)
License Artistic-2.0
Depends R (>= 2.12.2)
Imports flowCore, flowViz, graphics, kza, methods, minpack.lm, gplots
LinkingTo
Suggests flowFitExampleData
SystemRequirements
Enhances
URL
BugReports Davide Rambaldi
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowFit_1.25.0.tar.gz
Windows Binary flowFit_1.25.0.zip
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/flowFit
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowFit
Package Short Url https://bioconductor.org/packages/flowFit/
Package Downloads Report Download Stats

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