drawProteins

DOI: 10.18129/B9.bioc.drawProteins    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see drawProteins.

Package to Draw Protein Schematics from Uniprot API output

Bioconductor version: 3.11

This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.

Author: Paul Brennan [aut, cre]

Maintainer: Paul Brennan <brennanpincardiff at gmail.com>

Citation (from within R, enter citation("drawProteins")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("drawProteins")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drawProteins")

 

HTML R Script Using drawProteins
HTML R Script Using extract_transcripts in drawProteins
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews FunctionalPrediction, Proteomics, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.7 (R-3.5) (2.5 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports ggplot2, httr, dplyr, readr, stringr, tidyr
LinkingTo
Suggests covr, testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL https://github.com/brennanpincardiff/drawProteins
BugReports https://github.com/brennanpincardiff/drawProteins/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package drawProteins_1.8.0.tar.gz
Windows Binary drawProteins_1.8.0.zip
macOS 10.13 (High Sierra) drawProteins_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/drawProteins
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/drawProteins
Package Short Url https://bioconductor.org/packages/drawProteins/
Package Downloads Report Download Stats

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