TPP

DOI: 10.18129/B9.bioc.TPP    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TPP.

Analyze thermal proteome profiling (TPP) experiments

Bioconductor version: 3.11

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber

Maintainer: Dorothee Childs <dorothee.childs at embl.de>

Citation (from within R, enter citation("TPP")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TPP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP")

 

PDF R Script TPP_introduction_1D
PDF R Script TPP_introduction_2D
PDF R Script TPP_introduction_NPARC
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 3.16.5
In Bioconductor since BioC 3.1 (R-3.2) (5.5 years)
License Artistic-2.0
Depends R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, splines, stats, stringr, tibble, utils, VennDiagram, VGAM
LinkingTo
Suggests BiocStyle, testthat
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Depends On Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TPP_3.16.5.tar.gz
Windows Binary TPP_3.16.5.zip
macOS 10.13 (High Sierra) TPP_3.16.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/TPP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TPP
Package Short Url https://bioconductor.org/packages/TPP/
Package Downloads Report Download Stats

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