RefNet

DOI: 10.18129/B9.bioc.RefNet    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RefNet.

A queryable collection of molecular interactions, from many sources

Bioconductor version: 3.11

Obtain molecular interactions with metadata, some archived, some dynamically queried.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Citation (from within R, enter citation("RefNet")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RefNet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RefNet")

 

PDF R Script RefNet
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphAndNetwork, Software
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (6.5 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, IRanges, PSICQUIC, AnnotationHub, RCurl, shiny
Imports BiocGenerics
LinkingTo
Suggests RUnit, BiocStyle, org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me RCyjs
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RefNet_1.24.0.tar.gz
Windows Binary RefNet_1.24.0.zip
macOS 10.13 (High Sierra) RefNet_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RefNet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RefNet
Package Short Url https://bioconductor.org/packages/RefNet/
Package Downloads Report Download Stats

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