CAFE

DOI: 10.18129/B9.bioc.CAFE    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see CAFE.

Chromosmal Aberrations Finder in Expression data

Bioconductor version: 3.11

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")

 

PDF R Script Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (6.5 years)
License GPL-3
Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
LinkingTo
Suggests RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CAFE_1.24.0.tar.gz
Windows Binary CAFE_1.24.0.zip
macOS 10.13 (High Sierra) CAFE_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CAFE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CAFE
Package Short Url https://bioconductor.org/packages/CAFE/
Package Downloads Report Download Stats

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