ColumnDataTable-class {iSEE}R Documentation

The ColumnDataTable panel

Description

The ColumnDataTable is a panel class for creating a ColumnTable where the value of the table is defined as the colData of the SummarizedExperiment.

Slot overview

This class inherits all slots from its parent ColumnTable and Table classes.

Constructor

ColumnDataTable(...) creates an instance of a ColumnDataTable class, where any slot and its value can be passed to ... as a named argument.

Note that ColSearch should be a character vector of length equal to the total number of columns in the colData, though only the entries for the atomic fields will actually be used.

Supported methods

In the following code snippets, x is an instance of a ColumnDataTable class. Refer to the documentation for each method for more details on the remaining arguments.

For setting up data values:

For defining the interface:

For defining the panel name:

For creating the output:

Author(s)

Aaron Lun

Examples

#################
# For end-users #
#################

x <- ColumnDataTable()
x[["Selected"]]
x[["Selected"]] <- "SOME_SAMPLE_NAME"

##################
# For developers #
##################

library(scater)
sce <- mockSCE()

# Search column refinement works as expected.
sce0 <- .cacheCommonInfo(x, sce)
.refineParameters(x, sce0)


[Package iSEE version 2.0.0 Index]