iSEEOptions {iSEE} | R Documentation |
Set global options using iSEEOptions$set()
, so that all relevant panels will use these default values during initialization.
iSEEOptions
An object of class list
of length 4.
See str(iSEEOptions$get())
for a list of default panel options.
Note that iSEEOptions$restore()
can be used to reset the global options to the package default values.
point.color
Default color of data points in DotPlot
panels (character).
point.size
Default size of data points in DotPlot
panels (numeric).
point.alpha
Default alpha level controlling transparency of data points in DotPlot
panels (numeric).
downsample
Enable visual downsampling in DotPlot
panels (logical).
downsample.resolution
Resolution of the visual downsampling, if active (numeric).
selected.color
Color of selected data points in DotPlot
panels (character).
selected.alpha
Alpha level controlling transparency of data points not selected in DotPlot
panels (numeric).
selection.dynamic.single
Toggle dynamic single selections for all panels (logical).
selection.dynamic.multiple
Toggle dynamic multiple selections for all panels (logical).
contour.color
Color of the 2d density estimation contour in DotPlot
panels (character).
font.size
Global multiplier controlling the magnification of plot title and text elements in DotPlot
panels (numeric).
legend.position
Position of the legend in DotPlot
and ComplexHeatmapPlot
panels (one of "Bottom"
, "Right"
).
legend.direction
Position of the legend in DotPlot
and ComplexHeatmapPlot
panels (one of "Horizontal"
, "Vertical"
).
panel.width
Default panel grid width (must be between 1 and 12).
panel.height
Default panel height (in pixels).
panel.color
Named character vector of colors.
The names of the vector should be set to the name of class to be overridden; if a class is not named here, its default color is used.
It is highly recommended to define colors as hex color codes (e.g., "#1e90ff"
), for full compatibility with both HTML elements and R plots.
assay
Character vector of assay names to use if available, in order of preference.
Kevin Rue-Albrecht
iSEEOptions$get('downsample'); iSEEOptions$get('selected.color')