dittoSeq {dittoSeq}R Documentation

dittoSeq

Description

This package was built to make the analysis and visualization of single-cell and bulk RNA-sequencing data accessible for both experience and novice coders, and for colorblind individuals.

Details

Includes many plotting functions (dittoPlot, dittoDimPlot, dittoBarPlot, dittoHeatmap, ...), color adjustment functions (Simulate, Darken, Lighten), and helper funtions (meta, gene, isMeta, getMetas, ...) to aid in making sense of single cell or bulk RNA sequencing data. All included plotting functions produce a ggplot (or plotly, or pheatmap for dittoHeatmap) and can spit out full plot with just a few arguments. Many additional arguments are available for customization to generate complex publication-ready figures.

Default color panel is colorblind friendly [Wong B, "Points of view: Color blindness." Nature Methods, 2011.](https://www.nature.com/articles/nmeth.1618).

For more information, to give feedback, or to suggest new features, see the github, [here](https://github.com/dtm2451/DittoSeq).

Author(s)

Daniel Bunis


[Package dittoSeq version 1.0.2 Index]