dittoSeq {dittoSeq} | R Documentation |
This package was built to make the analysis and visualization of single-cell and bulk RNA-sequencing data accessible for both experience and novice coders, and for colorblind individuals.
Includes many plotting functions (dittoPlot
, dittoDimPlot
, dittoBarPlot
, dittoHeatmap
, ...),
color adjustment functions (Simulate
, Darken
, Lighten
),
and helper funtions (meta
, gene
, isMeta
, getMetas
, ...) to aid in making sense of single cell or bulk RNA sequencing data.
All included plotting functions produce a ggplot (or plotly, or pheatmap for dittoHeatmap) and can spit out full plot with just a few arguments.
Many additional arguments are available for customization to generate complex publication-ready figures.
Default color panel is colorblind friendly [Wong B, "Points of view: Color blindness." Nature Methods, 2011.](https://www.nature.com/articles/nmeth.1618).
For more information, to give feedback, or to suggest new features, see the github, [here](https://github.com/dtm2451/DittoSeq).
Daniel Bunis