STAR.remove.crashed.genome {ORFik}R Documentation

Remove crashed STAR genome

Description

This happens if you abort STAR run early, and it halts at: ..... loading genome

Usage

STAR.remove.crashed.genome(index.path, star.path = STAR.install())

Arguments

index.path

path to index folder of genome

star.path

path to STAR, default: STAR.install(), if you don't have STAR installed at default location, it will install it there, set path to a runnable star if you already have it.

Value

return value from system, 0 if all good.

See Also

Other STAR: STAR.align.folder(), STAR.align.single(), STAR.index(), STAR.install(), STAR.multiQC(), getGenomeAndAnnotation(), install.fastp()

Examples

# STAR.remove.crashed.genome(index.path = "/home/data/human_index/phix/)

[Package ORFik version 1.8.6 Index]