QC_count_tables {ORFik}R Documentation

Create count table info for QC report

Description

The better the annotation / gtf used, the more results you get.

Usage

QC_count_tables(df, out.dir, BPPARAM = bpparam())

Arguments

df

an ORFik experiment

out.dir

optional output directory, default: dirname(df$filepath[1]). Will make a folder called "QC_STATS" with all results in this directory.

BPPARAM

how many cores/threads to use? default: bpparam(). To see number of threads used, do bpparam()$workers

Value

a data.table of the count info


[Package ORFik version 1.8.6 Index]