STAR.install {ORFik}R Documentation

Download and prepare STAR

Description

Will not run "make", only use precompiled STAR file.
Can only run on unix systems (Linux and Mac), and requires minimum 30GB memory on genomes like human, rat, zebrafish etc.

Usage

STAR.install(folder = "~/bin", version = "2.7.4a")

Arguments

folder

path to folder for download, fille will be named "STAR-version", where version is version wanted.

version

default "2.7.4a"

Value

path to runnable STAR

References

https://www.ncbi.nlm.nih.gov/pubmed/23104886

See Also

Other STAR: STAR.align.folder(), STAR.align.single(), STAR.index(), STAR.multiQC(), STAR.remove.crashed.genome(), getGenomeAndAnnotation(), install.fastp()

Examples

#STAR.install("~/bin", version = "2.7.4a")

[Package ORFik version 1.8.6 Index]