Mixture Nested Effects Models


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Documentation for package ‘mnem’ version 1.3.1

Help Pages

app Processed scRNAseq from pooled CRISPR screens
bootstrap Bootstrap.
clustNEM Cluster NEM.
createApp Creating app data.
fitacc Simulation accuracy.
fuzzyindex Calculate fuzzy ground truth.
getAffinity Calculate responsibilities.
getIC Calculate negative penalized log likelihood.
hamSim Accuracy for two phis.
mnem Mixture NEMs - main function.
mnemh Hierarchical mixture.
mnemk Learn the number of components K and optimize the mixture.
plot.bootmnem Plot bootstrap mnem result.
plot.mnem Plot mnem result.
plot.mnemsim Plot simulated mixture.
plotConvergence Plot convergence of EM
plotDnf Plot disjunctive normal form.
simData Simulate data.