# GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

## Documentation for package ‘GCSscore’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

calcSF | calculates Scaling Factor (SF) values
computeSscore | Computes GCS-score values
GCSscore | Main GCS-score Function
get3primeIVTprobefileData | Read a data file describing the probe sequences on an Affymetrix genechip
getClariomSprobefileData | Read a data file describing the probe sequences on an Affymetrix genechip
getWTgeneexonprobefileData | Read a data file describing the probe sequences on an Affymetrix genechip
getXTAprobefileData | Read a data file describing the probe sequences on an Affymetrix genechip
mismatch | Calculates mismatch values for probes
normalize | Normalization of GCS-score values
rawScore | Calculates the rawScore values
zoneRQ | Calculates the zone-based RawQ values