AffyInteraction |
Analyze interaction effect and produce output |
AffyQA |
Microarray quality control and assessment |
AffyRegress |
Select differentially expressed genes, and output the result to a html file |
Filter |
filter an 'ExpressionSet' using different methods |
import.data |
Importing Affy Cel File |
interaction.result2html |
output differentially expressed genes for the interaction model to a HTML file |
make.contrast |
Create a contrast matrix |
make.design |
Create a Design Matrix |
post.interaction |
Create a list of tables for the result based on the main effect variable |
pre.process |
Data Preprocessing |
regress |
Run regression to fit genewise linear model |
result2html |
output differentially expressed genes to a HTML file |
select.sig.gene |
select differentially expressed genes based on p value and/or fold change |
testData |
AffyBatch instance testData |