Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data

Documentation for package ‘slalom’ version 1.10.0

slalom-package	Factorial single-cell latent variable models
addResultsToSingleCellExperiment	Add results to SingleCellExperiment object
initSlalom	Initialize a SlalomModel object
mesc	A single-cell expression dataset to demonstrate capabilities of slalom from mouse embryonic stem cells (mESCs)
newSlalomModel	Create a new SlalomModel object.
plotLoadings	Plot highest loadings of a factor
plotRelevance	Plot results of a Slalom model
plotTerms	Plot relevance for all terms
Rcpp_SlalomModel	The "Slalom Model" (Rcpp_SlalomModel) class
Rcpp_SlalomModel-class	The "Slalom Model" (Rcpp_SlalomModel) class
slalom	Factorial single-cell latent variable models
SlalomModel	SlalomModel C++ class
topTerms	Show results of a Slalom model
train	Train a SlalomModel object
train-method	Train a SlalomModel object
trainSlalom	Train a SlalomModel object
updateSlalom	Update a SlalomModel object