Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data


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Documentation for package ‘slalom’ version 1.10.0

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slalom-package Factorial single-cell latent variable models
addResultsToSingleCellExperiment Add results to SingleCellExperiment object
initSlalom Initialize a SlalomModel object
mesc A single-cell expression dataset to demonstrate capabilities of slalom from mouse embryonic stem cells (mESCs)
newSlalomModel Create a new SlalomModel object.
plotLoadings Plot highest loadings of a factor
plotRelevance Plot results of a Slalom model
plotTerms Plot relevance for all terms
Rcpp_SlalomModel The "Slalom Model" (Rcpp_SlalomModel) class
Rcpp_SlalomModel-class The "Slalom Model" (Rcpp_SlalomModel) class
slalom Factorial single-cell latent variable models
SlalomModel SlalomModel C++ class
topTerms Show results of a Slalom model
train Train a SlalomModel object
train-method Train a SlalomModel object
trainSlalom Train a SlalomModel object
updateSlalom Update a SlalomModel object