Cross Platform Meta-Analysis of Microarray Data


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Documentation for package ‘crossmeta’ version 1.14.0

Help Pages

add_sources Add sample source information for meta-analysis.
contribute Contribute results of meta-analysis to public database.
diff_expr Differential expression analysis of esets.
diff_path Differential expression of KEGG pathways.
es_meta Effect size combination meta analysis.
explore_paths Explore pathway meta analyses.
get_raw Download and unpack microarray supplementary files from GEO.
gs.names Map between KEGG pathway numbers and names.
gslist KEGG human pathway genes.
load_diff Load previous differential expression analyses.
load_path Load previous pathway analyses.
load_raw Load and annotate raw data downloaded from GEO.
path_meta Pathway p-value meta analysis.
setup_prev Setup selections when many samples.
symbol_annot Add hgnc symbol to expression set.
which_max_iqr Get row indices of maximum IQR within annotation groups