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| StarBioTrek-package | Download data |
| average | For TCGA data get human pathway data and creates a matrix with the average of genes for each pathway. |
| circleplot | Preparation for circle plot |
| ConvertedIDgenes | Get interacting genes inside pathways. |
| dsscorecrtlk | For TCGA data get human pathway data and creates a measure of discriminating score among pathways |
| eucdistcrtlk | For TCGA data get human pathway data and creates a measure of cross-talk among pathways |
| GetData | Get general information inside pathways. |
| getNETdata | Get network data from GeneMania. |
| GetPathData | Get genes inside pathways. |
| GetPathNet | Get interacting genes inside pathways. |
| GE_matrix | Get human KEGG pathway data and a gene expression matrix in order to obtain a list with the gene expression for only pathways given in input . |
| GE_matrix_mean | Get human KEGG pathway data and a gene expression matrix in order to obtain a matrix with the mean gene expression for only pathways given in input . |
| GOChord | Displays the relationship between genes and terms. |
| IPPI | Multilayer analysis Cava et al. BMC Genomics 2017 |
| listpathnet | Get human KEGG pathway data and the output of list_path_net define the common genes. |
| pathnet | Get human KEGG pathway data and creates a network data. |
| plotcrosstalk | Preparation for plotting cross-talk |
| SelectedSample | Select the class of TCGA data |
| select_class | Select the class of TCGA data |
| StarBioTrek | Download data |
| stdv | For TCGA data get human pathway data and creates a measure of standard deviations among pathways |
| svm_classification | SVM classification for each feature |