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| STATegRa-package | STATegRa |
| bioDist | bioDist |
| bioDist-method | bioDist |
| bioDistclass | bioDistclass |
| bioDistFeature | bioDistFeature |
| bioDistFeature-method | bioDistFeature |
| bioDistFeaturePlot | bioDistFeaturePlot |
| bioDistW | bioDistW |
| bioDistW-method | bioDistW |
| bioDistWPlot | bioDistWPlot |
| bioDistWPlot-method | bioDistWPlot |
| bioMap | bioMap |
| Block1 | STATegRa data |
| Block1.PCA | STATegRa data |
| Block2 | STATegRa data |
| Block2.PCA | STATegRa data |
| caClass-class | caClass |
| combiningMappings | combiningMappings, combining several mappings for use in the omicsNPC function |
| createOmicsExpressionSet | createOmicsExpressionSet |
| createOmicsExpressionSet-method | createOmicsExpressionSet |
| ed | STATegRa data |
| ed.PCA | STATegRa data |
| getInitialData | Retrieve initial data from caClass objects |
| getInitialData-method | Retrieve initial data from caClass objects |
| getLoadings | Retrieve component analysis loadings |
| getLoadings-method | Retrieve component analysis loadings |
| getMethodInfo | Retrieve information about component analysis method |
| getMethodInfo-method | Retrieve information about component analysis method |
| getPreprocessing | Retrieve information about preprocessing |
| getPreprocessing-method | Retrieve information about preprocessing |
| getScores | Retrieve component analysis scores |
| getScores-method | Retrieve component analysis scores |
| getVAF | Retrieve information abotut VAF |
| getVAF-method | Retrieve information abotut VAF |
| holistOmics | HolistOmics an application of NPC on omics datasets |
| holistOmics-method | HolistOmics an application of NPC on omics datasets |
| mapdata | STATegRa data |
| modelSelection | Find optimal common and distinctive components |
| modelSelection-method | Find optimal common and distinctive components |
| omicsCompAnalysis | Components analysis for multiple objects |
| omicsCompAnalysis-method | Components analysis for multiple objects |
| omicsNPC | omicsNPC, applying the Non-Parametric Combination (NPC) on omics datasets |
| omicsNPC-method | omicsNPC, applying the Non-Parametric Combination (NPC) on omics datasets |
| plotRes | Plot component analysis results |
| plotRes-method | Plot component analysis results |
| plotVAF | Plot VAF (Variance Explained For) from Component Analysis |
| plotVAF-method | Plot VAF (Variance Explained For) from Component Analysis |
| STATegRa | STATegRa |
| STATegRa-defunct | Defunct functions in STATegRa |
| STATegRaUsersGuide | STATegRaUsersGuide |
| STATegRa_data | STATegRa data |
| STATegRa_data_TCGA_BRCA | STATegRa data |
| TCGA_BRCA_Data | STATegRa data |