Annotation translation functions


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Documentation for package ‘AnnotationFuncs’ version 1.38.0

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.dbEscapeString Private Escape string...
.getTableName Gets the table name from the INPARANOID style genus names.
.pickRef Secret function that does the magic for pickRefSeq.
AnnotationFuncs Annotation translation functions
getEvidenceCodes Returns GO evidence codes.
getOrthologs Performs quicker lookup for orthologs in homologe data packages...
mapLists Replaces contents of list A with elements of list B...
pickGO Cleans up result from org...
pickRefSeq Picks a prioritised RefSeq identifier from a list of identifiers...
pickRefSeq.mRNA Picks a prioritised RefSeq identifier from a list of identifiers...
pickRefSeq.Protein Picks a prioritised RefSeq identifier from a list of identifiers...
removeNAs Removes entries equal NA from list or vector...
translate Translate between different identifiers...