ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

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Documentation for package ‘ASpediaFI’ version 1.2.0

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analyzeFI Functional interaction analysis of AS events
annotateASevents AS event annotation
as.table ASpediaFI accessors
as.table-method ASpediaFI accessors
as.table<- ASpediaFI accessors
as.table<--method ASpediaFI accessors
ASpediaFI ASpediaFI class
ASpediaFI-accessor ASpediaFI accessors
ASpediaFI-class ASpediaFI class
events ASpediaFI accessors
events-method ASpediaFI accessors
events<- ASpediaFI accessors
events<--method ASpediaFI accessors
exportNetwork Export network to GML format
gene.table ASpediaFI accessors
gene.table-method ASpediaFI accessors
gene.table<- ASpediaFI accessors
gene.table<--method ASpediaFI accessors
GSE114922.fpkm Example gene expression dataset
GSE114922.psi Example dataset containing PSI values
gtf ASpediaFI accessors
gtf-method ASpediaFI accessors
gtf<- ASpediaFI accessors
gtf<--method ASpediaFI accessors
network ASpediaFI accessors
network-method ASpediaFI accessors
network<- ASpediaFI accessors
network<--method ASpediaFI accessors
pathway.table ASpediaFI accessors
pathway.table-method ASpediaFI accessors
pathway.table<- ASpediaFI accessors
pathway.table<--method ASpediaFI accessors
psi ASpediaFI accessors
psi-method ASpediaFI accessors
psi<- ASpediaFI accessors
psi<--method ASpediaFI accessors
quantifyPSI AS event quantification
samples ASpediaFI accessors
samples-method ASpediaFI accessors
samples<- ASpediaFI accessors
samples<--method ASpediaFI accessors
visualize AS event and pathway visualization