Analyzing single-cell RNA-seq data with R/Bioconductor

Aaron T. L. Lun1, Davis J. McCarthy2,3 and John C. Marioni1,2,4

1Cancer Research UK Cambridge Institute, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, United Kingdom
2EMBL European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom
3St Vincent's Institute of Medical Research, 41 Victoria Parade, Fitzroy, Victoria 3065, Australia
4Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom

1 Workflow version information

R version: R version 3.6.1 (2019-07-05)

Bioconductor version: 3.10

Package: 1.10.1

2 Redirection Notice

All previous content related to these workflows have been migrated to the Orchestrating Single-Cell Analysis with Bioconductor book. This book provides a nicer and more easily navigable format, as well as additional worked examples and more in-depth theoretical discussions.