TCGAWorkflowData

DOI: 10.18129/B9.bioc.TCGAWorkflowData    

This is the development version of TCGAWorkflowData; to use it, please install the devel version of Bioconductor.

Data for TCGA Workflow

Bioconductor version: Development (3.10)

This experimental data package contains 11 data sets necessary to follow the "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages".

Author: Tiago Chedraoui Silva <tiagochst at usp.br>

Maintainer: Tiago Chedraoui Silva <tiagochst at usp.br>

Citation (from within R, enter citation("TCGAWorkflowData")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TCGAWorkflowData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCGAWorkflowData")

 

HTML R Script 'Example data for TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages'
PDF   Reference Manual
Text   NEWS

Details

biocViews CancerData, ExperimentData, Homo_sapiens_Data, MicroarrayData
Version 1.9.1
License GPL-3
Depends R (>= 3.5.0)
Imports SummarizedExperiment
LinkingTo
Suggests knitr, rmarkdown, pander, testthat
SystemRequirements
Enhances
URL https://f1000research.com/articles/5-1542/v2
BugReports https://github.com/BioinformaticsFMRP/TCGAWorkflow/issues
Depends On Me
Imports Me TCGAWorkflow
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TCGAWorkflowData_1.9.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/TCGAWorkflowData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TCGAWorkflowData
Package Short Url http://bioconductor.org/packages/TCGAWorkflowData/
Package Downloads Report Download Stats

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