RTCGA.methylation

DOI: 10.18129/B9.bioc.RTCGA.methylation    

This is the development version of RTCGA.methylation; to use it, please install the devel version of Bioconductor.

Methylation datasets from The Cancer Genome Atlas Project

Bioconductor version: Development (3.10)

Package provides methylation (humanmethylation27) datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/DNA+methylation Data from 2015-11-01 snapshot.

Author: Marcin Kosinski [aut, cre], Witold Chodor [aut]

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.methylation")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RTCGA.methylation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.methylation")

 

HTML R Script Using RTCGA to download methylation data as included in RTCGA.methylation
PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, ExperimentData
Version 1.13.0
License GPL-2
Depends R (>= 3.3.0), RTCGA
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.methylation_1.13.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.methylation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.methylation
Package Short Url https://bioconductor.org/packages/RTCGA.methylation/
Package Downloads Report Download Stats

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