HiCDataLymphoblast

DOI: 10.18129/B9.bioc.HiCDataLymphoblast    

This is the development version of HiCDataLymphoblast; to use it, please install the devel version of Bioconductor.

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

Bioconductor version: Development (3.10)

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>

Citation (from within R, enter citation("HiCDataLymphoblast")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HiCDataLymphoblast")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataLymphoblast")

 

PDF R Script package_vignettes.pdf
PDF   Reference Manual

Details

biocViews ExperimentData, Homo_sapiens_Data
Version 1.21.1
License GPL-3
Depends
Imports
LinkingTo
Suggests ShortRead
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me GOTHiC
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiCDataLymphoblast_1.21.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HiCDataLymphoblast
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiCDataLymphoblast
Package Short Url https://bioconductor.org/packages/HiCDataLymphoblast/
Package Downloads Report Download Stats

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