ENCODExplorerData

DOI: 10.18129/B9.bioc.ENCODExplorerData    

A compilation of ENCODE metadata

Bioconductor version: Release (3.10)

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Author: Charles Joly Beauparlant [aut], Eric Fournier [aut, cre], Arnaud Droit [aut]

Maintainer: Eric Fournier <Fournier.Eric.2 at crchudequebec.ulaval.ca>

Citation (from within R, enter citation("ENCODExplorerData")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ENCODExplorerData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENCODExplorerData")

 

HTML Introduction to ENCODExplorerData
PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, AnnotationHub, CustomDBSchema, Homo_sapiens, Mus_musculus
Version 0.99.4
License Artistic-2.0
Depends R (>= 3.6)
Imports tools, jsonlite, RCurl, tidyr, data.table, methods
LinkingTo
Suggests AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr
SystemRequirements
Enhances
URL
BugReports https://github.com/ArnaudDroitLab/ENCODExplorerData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ENCODExplorerData_0.99.4.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/ENCODExplorerData/
Package Downloads Report Download Stats

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