BSgenome.Drerio.UCSC.danRer7

DOI: 10.18129/B9.bioc.BSgenome.Drerio.UCSC.danRer7    

This is the development version of BSgenome.Drerio.UCSC.danRer7; to use it, please install the devel version of Bioconductor.

Full genome sequences for Danio rerio (UCSC version danRer7)

Bioconductor version: Development (3.10)

Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Drerio.UCSC.danRer7")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BSgenome.Drerio.UCSC.danRer7")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, BSgenome, Danio_rerio, Genetics
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
LinkingTo
Suggests GenomicFeatures
SystemRequirements
Enhances
URL
Depends On Me BSgenome.Drerio.UCSC.danRer7.masked
Imports Me BSgenome.Drerio.UCSC.danRer7.masked, cleanUpdTSeq
Suggests Me CAGEr, ChIPpeakAnno, heatmaps, motifbreakR, seqPattern
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Drerio.UCSC.danRer7_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url http://bioconductor.org/packages/BSgenome.Drerio.UCSC.danRer7/
Package Downloads Report Download Stats

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