## ----style-knitr, eval=TRUE, echo=FALSE, results="asis"-------------------- BiocStyle::latex() ## ----loadPkg--------------------------------------------------------------- suppressPackageStartupMessages({ library(UniProt.ws) }) up <- UniProt.ws(taxId=9606) ## ----help,eval=FALSE------------------------------------------------------- # help("UniProt.ws") ## ----show------------------------------------------------------------------ up ## ----availSpecies---------------------------------------------------------- availableUniprotSpecies(pattern="musculus") ## ----setTaxID-------------------------------------------------------------- mouseUp <- UniProt.ws(10090) mouseUp ## ----columns--------------------------------------------------------------- head(keytypes(up)) ## ----keytypes-------------------------------------------------------------- head(columns(up)) ## ----keys,eval=FALSE------------------------------------------------------- # egs = keys(up, "ENTREZ_GENE") ## ----select---------------------------------------------------------------- keys <- c("1","2") columns <- c("PDB","HGNC","SEQUENCE") kt <- "ENTREZ_GENE" res <- select(up, keys, columns, kt) res ## ----