1.1.6 2010-03-13 o New package 1.1.7 2010-03-16 o Added function entityGraph o Added function sraGraph o Modified related help pages 1.1.8 2010-03-17 o Made various changes according to the reviewer's comments o More examples executable o Fixed some bugs o Added more help contents 1.1.9 2010-03-20 o Change argument of destdir in getFastq to be required o Fixed some bugs o Imporoved help contents 1.1.10 2010-03-21 o Fixed some bugs 1.1.11 2010-04-10 o Use 'TRUE' rather than 'T' o Format SQL consistently as SELECT * FROM table, etc. o Avoid long lines in code o Use message() rather than print() or cat() to communicate with user o Expose 'method' argument of download.file 1.1.12 2010-04-12 o Now using socket connections for interacting with IGV o load2IGV and load2newIGV retired o IGVload, IGVgenome, IGVgoto, and IGVsnapshot introduced as replacements for the single load2... commands 1.3.0 2010-04-22 o New version for bioc-dev 2.7 1.3.1 2010-04-23 o Added IGVsession function o Moved IGVsnapshotDirectory functionality into IGVsnapshot o Removed IGVsnapshotDirectory o Modified all corresponding help pages 1.3.2 2010-09-07 o Added IGVsort function o Added IGVcollapse function o Added function to check fastq file type inside of listFastq 1.5.0 2010-10-18 o Added IGVsession function 1.5.1 2011-01-06 o Removed functions of listFastq, getFastqInfo, getFastq o Added listSRAfile function o Added getSRAinfo function o Added getSRAfile function 1.21.8 2014-12-12 o Added fastq table to the database o Re-wrote getFastqInfo function o Fastq files can be downloaded by getFastqFile or getSRAfile o Added to the fastq ftp addresses for SRR accessions over SRR999999 1.21.11 2015-03-22 o Fixed a bug with listSRAfile function.