CHANGES in VERSION 1.2 ---------------------- SIGNIFICANT USER-VISIBLE CHANGES o When plotting the FDR (i.e. plot(pics,picsC)) the number of enriched regions is also displayed as a function of the cutoff score at the top. NEW FEATURES o Support for the multicore package. The number of cores will automatically be detected. The multicore package needs to be loaded for that. o Snowfall is still supported and if sfCluster() is called, snowfall will be used over multicore. So if you want to use snowfall make sure not to load multicore BUG FIXES o Fixed a bug when calculating the scores. The scores are now normalized for the number of reads in the control. This could have affected the FDR calculation. o Added better documentation for the plotting methods. Typing ?plot or ?FDR should get you better documentation. (start date: 1 May, 2010)