CHANGES IN VERSION 1.3.5 ----------------------------- o Change plotAberrantPerSample from base-R to ggplot2 o Add plotSizeFactors o Minor aesthetic changes in plotting o Update documentation CHANGES IN VERSION 1.3.2 ----------------------------- o Documentation o New plot functionality - plotExpectedVsObservedCounts() - plotCountGeneSampleHeatmap() - plotExpressedGenes() o Minor bug fixes o Linking to publication REVISED VERSION 0.99.29 ----------------------------- o Major changes o Improved autoencoder model. o Updated API o Improved default parameters. SECOND BIOCONDUCTOR SUBMISSION 0.99.10 ----------------------------- o Smaller and faster example data set o Loss and gradient of loss in C++ o Bugfixes INITIAL BIOCONDUCTOR SUBMISSION 0.99.8 ----------------------------- o Better documentation o Little changes in default values o Code cleanup and improvements o Bugfixes R IMPLEMENTATION OF THE AUTOENCODER 0.99.7 ----------------------------- o Adding the R implementation of the autoencoder o Little changes in default values o Updating and completing documentation o Bugfixes MINOR BUGFIXES AND UPDATE OF AUTOCORRECTION 0.99.6 ----------------------------- o Minor changes in plotting functions o Update interface to autoCorrection o Bugfixes GITHUB RELEASE OF OUTRIDER 0.99.5 ----------------------------- o Pre-release of OUTRIDER on GitHub INITIAL SETUP OF OUTRIDER VERSION 0.99.2 ----------------------------- o Initial setup of OUTRIDER package o Added autoCorrect (Auto Encoder) as normalization function