CHANGES IN VERSION 1.4.5 [2020-03-01] ------------------------- UPDATED FEATURES - Add new function OpenMStoMSstatsTMTFormat() CHANGES IN VERSION 1.4.4 [2020-02-01] ------------------------- UPDATED FEATURES - Fix bug in PDtoMSstatsTMTFormat(): remove redundant rows when combining multiple fractions CHANGES IN VERSION 1.4.3 [2019-12-28] ------------------------- UPDATED FEATURES - Fix bug in groupComparisonTMT(): very few measurements case previously doesn't work CHANGES IN VERSION 1.4.2 [2019-12-20] ------------------------- UPDATED FEATURES - Add the column 'issue' to the output of groupComparisonTMT() CHANGES IN VERSION 1.4.1 [2019-10-31] ------------------------- UPDATED FEATURES - Fix the bug in the PDtoMSstatsTMTFormat() due to different PD version CHANGES IN VERSION 1.2.7 [2019-08-22] ------------------------- UPDATED FEATURES - Update normalization options in proteinSummarization() function, including global protein normalization and local peptide normalization with respect to reference channel - Fix the bug in the contrast comparison of groupComparisonTMT() function. CHANGES IN VERSION 1.2.2 [2019-06-03] ------------------------- UPDATED FEATURES - Update the linear modeling in groupComparisonTMT() function. Implement 5 linear models. - Update the format of annotation file. If the channel has no sample, add 'Empty' under condition and BioReplicate columns. CHANGES IN VERSION 1.2.0 [2019-05-03] ------------------------- UPDATED FEATURES - Update the format of annotation file - Remove the 'fraction' option from coverter functions - Update the linear modeling in groupComparisonTMT() function UPDATED FEATURES - Fix bugs in groupComparisonTMT() when using lm() function CHANGES IN VERSION 1.0.0 [2018-09-21] ------------------------- + Submitted to Bioconductor