Changes in version 0.99.25 (2019-09-11) - Added message to indicate when get_velocity_files is extracting exon-exon junctions. - Restored "separate" to be default isoform_action in get_velocity_files. Changes in version 0.99.24 (2019-09-06) - When sorting tr2g from file, now the file must be formatted in ways required by bustools. Changes in version 0.99.23 (2019-09-06) - Previous two version bumps did not accompany changes; those were used to trigger rebuilds on Bioconductor. - Added the functionality to use L-1 (L is read length) bases around exon-exon junction to better distinguish between spliced and unspliced transcripts for RNA velocity. - Fixed serious problem with get_velocity_file that counted reads mapping to exons of length between L-1 and 2(L-1) as from unspliced transcript. This was done by an reimplementation of the method to get flanked intronic ranges. - Changed default isoform_action to "collapse". - Make sure that all transcripts in tr2g.tsv from get_velocity_files are in the transcriptome. Changes in version 0.99.20 (2019-08-26) - Addressed Bioconductor review. Changes in version 0.99.19 (2019-07-23) - Finished get_velocity_files to generate files required for kallisto | bustools RNA velocity. Changes in version 0.99.0 (2019-06-21) - Submitted package to Bioconductor for review