sojourner

DOI: 10.18129/B9.bioc.sojourner    

This is the development version of sojourner; to use it, please install the devel version of Bioconductor.

sojourner: An R package for statistical analysis of single molecule trajectories

Bioconductor version: Development (3.10)

Single molecule tracking has evolved as a novel new approach complementing genomic sequencing, it reports live biophysical properties of molecules being investigated besides properties relating their coding sequence; here we provided "sojourner" package, to address statistical and bioinformatic needs related to the analysis and comprehension of high throughput single molecule tracking data.

Author: Sheng Liu [aut], Sun Jay Yoo [aut], Xiao Na Tang [aut], Young Soo Sung [aut], Carl Wu [aut], Anand Ranjan [ctb], Vu Nguyen [ctb], Sojourner Developer [cre]

Maintainer: Sojourner Developer <sojourner.developer at outlook.com>

Citation (from within R, enter citation("sojourner")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sojourner")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sojourner")

 

HTML R Script Sojourner: an R package for statistical analysis of single molecule trajectories
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Details

biocViews Software, Technology, WorkflowStep
Version 0.99.8
In Bioconductor since BioC 3.10 (R-3.6)
License Artistic-2.0
Depends
Imports ggplot2, dplyr, reshape2, gridExtra, EBImage, MASS, R.matlab, Rcpp, boot, fitdistrplus, mclust, minpack.lm, mixtools, mltools, nls2, plyr, rtiff, sampSurf, scales, shiny, shinyjs, sp, truncnorm, utils, stats, pixmap, SDMTools, rlang, rowr, graphics, grDevices, grid, compiler, lattice
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL https://github.com/sheng-liu/sojourner
BugReports https://github.com/sheng-liu/sojourner/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sojourner_0.99.8.tar.gz
Windows Binary sojourner_0.99.8.zip
Mac OS X 10.11 (El Capitan) sojourner_0.99.8.tgz
Source Repository git clone https://git.bioconductor.org/packages/sojourner
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sojourner
Package Short Url https://bioconductor.org/packages/sojourner/
Package Downloads Report Download Stats

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