netboost

DOI: 10.18129/B9.bioc.netboost    

Network Analysis Supported by Boosting

Bioconductor version: Release (3.10)

Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.

Author: Pascal Schlosser [aut, cre], Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]

Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>

Citation (from within R, enter citation("netboost")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netboost")

 

HTML R Script The Netboost users guide
PDF   Reference Manual
Text   NEWS

Details

biocViews BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics
Version 1.2.2
In Bioconductor since BioC 3.9 (R-3.6) (0.5 years)
License GPL-3
Depends R (>= 3.6.0)
Imports Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, R.utils
LinkingTo Rcpp, RcppParallel
Suggests knitr
SystemRequirements GNU make, Bash, Perl, Gzip
Enhances
URL https://bioconductor.org/packages/release/bioc/html/netboost.html
BugReports https://github.com/PascalSchlosser/netboost/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netboost_1.2.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) netboost_1.2.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/netboost
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netboost
Package Short Url https://bioconductor.org/packages/netboost/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive

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