lapmix

DOI: 10.18129/B9.bioc.lapmix    

This is the development version of lapmix; to use it, please install the devel version of Bioconductor.

Laplace Mixture Model in Microarray Experiments

Bioconductor version: Development (3.10)

Laplace mixture modelling of microarray experiments. A hierarchical Bayesian approach is used, and the hyperparameters are estimated using empirical Bayes. The main purpose is to identify differentially expressed genes.

Author: Yann Ruffieux, contributions from Debjani Bhowmick, Anthony C. Davison, and Darlene R. Goldstein

Maintainer: Yann Ruffieux <yann.ruffieux at epfl.ch>

Citation (from within R, enter citation("lapmix")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("lapmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lapmix")

 

PDF R Script lapmix example
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, OneChannel, Software
Version 1.51.0
In Bioconductor since BioC 1.9 (R-2.4) (13 years)
License GPL (>= 2)
Depends R (>= 2.6.0), stats
Imports Biobase, graphics, grDevices, methods, stats, tools, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.r-project.org http://www.bioconductor.org http://stat.epfl.ch
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lapmix_1.51.0.tar.gz
Windows Binary lapmix_1.51.0.zip
Mac OS X 10.11 (El Capitan) lapmix_1.51.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/lapmix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lapmix
Package Short Url https://bioconductor.org/packages/lapmix/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: