DOI: 10.18129/B9.bioc.funtooNorm    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see funtooNorm.

Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit

Bioconductor version: 3.10

Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.

Author: Celia Greenwood <celia.greenwood at>,Stepan Grinek <stepan.grinek at>, Maxime Turgeon <maxime.turgeon at>, Kathleen Klein <kathleen.klein at>

Maintainer: Kathleen Klein <kathleen.klein at>

Citation (from within R, enter citation("funtooNorm")):


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PDF R Script Normalizing Illumina Infinium Human Methylation 450k for multiple cell types with funtooNorm
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Text   NEWS


biocViews DNAMethylation, Normalization, Preprocessing, Software
Version 1.10.0
In Bioconductor since BioC 3.5 (R-3.4) (3 years)
License GPL-3
Depends R (>= 3.4)
Imports pls, matrixStats, minfi, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomeInfoDb, grDevices, graphics, stats
Suggests prettydoc, minfiData, knitr, rmarkdown
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