DOI: 10.18129/B9.bioc.condcomp    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see condcomp.

Condition Comparison in scRNA-seq Data

Bioconductor version: Release (3.10)

For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.

Author: Diogo P. P. Branco <diogo.pp.branco at>

Maintainer: <>

Citation (from within R, enter citation("condcomp")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Clustering, ImmunoOncology, SingleCell, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 3.8 (R-3.5) (1.5 years)
License GPL (>=2) | file LICENSE
Depends R (>= 3.5.0)
Imports cluster, ggplot2, ggrepel, outliers
Suggests testthat, knitr, rmarkdown, BiocStyle, Matrix, Seurat, monocle, HSMMSingleCell
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