chopsticks

DOI: 10.18129/B9.bioc.chopsticks    

This is the development version of chopsticks; to use it, please install the devel version of Bioconductor.

The 'snp.matrix' and 'X.snp.matrix' Classes

Bioconductor version: Development (3.10)

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>

Citation (from within R, enter citation("chopsticks")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chopsticks")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chopsticks")

 

PDF R Script snpMatrix
PDF   Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, SNPsAndGeneticVariability, Software
Version 1.51.0
In Bioconductor since BioC 2.8 (R-2.13) (8.5 years)
License GPL-3
Depends
Imports graphics, stats, utils, methods, survival
LinkingTo
Suggests hexbin
SystemRequirements
Enhances
URL http://outmodedbonsai.sourceforge.net/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chopsticks_1.51.0.tar.gz
Windows Binary chopsticks_1.51.0.zip
Mac OS X 10.11 (El Capitan) chopsticks_1.51.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/chopsticks
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chopsticks
Package Short Url https://bioconductor.org/packages/chopsticks/
Package Downloads Report Download Stats

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