DOI: 10.18129/B9.bioc.bumphunter    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see bumphunter.

Bump Hunter

Bioconductor version: 3.10

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry [cre, aut], Martin Aryee [aut], Kasper Daniel Hansen [aut], Hector Corrada Bravo [aut], Shan Andrews [ctb], Andrew E. Jaffe [ctb], Harris Jaffee [ctb], Leonardo Collado-Torres [ctb]

Maintainer: Rafael A. Irizarry <rafa at jimmy.harvard.edu>

Citation (from within R, enter citation("bumphunter")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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PDF R Script The bumphunter user's guide
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, Epigenetics, ImmunoOncology, Infrastructure, MultipleComparison, Software
Version 1.28.0
In Bioconductor since BioC 2.12 (R-3.0) (7 years)
License Artistic-2.0
Depends R (>= 3.5), S4Vectors(>= 0.9.25), IRanges(>= 2.3.23), GenomeInfoDb, GenomicRanges, foreach, iterators, methods, parallel, locfit
Imports matrixStats, limma, doRNG, BiocGenerics, utils, GenomicFeatures, AnnotationDbi, stats
Suggests testthat, RUnit, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
URL https://github.com/ririzarr/bumphunter
Depends On Me minfi
Imports Me brainflowprobes, ChAMP, derfinder, dmrseq, GenomicState, methylCC, methyvim, recountWorkflow
Suggests Me bigmelon, derfinderPlot, epivizrData, regionReport
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package bumphunter_1.28.0.tar.gz
Windows Binary bumphunter_1.28.0.zip
Mac OS X 10.11 (El Capitan) bumphunter_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bumphunter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bumphunter
Package Short Url https://bioconductor.org/packages/bumphunter/
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