DOI: 10.18129/B9.bioc.biscuiteer    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see biscuiteer.

Convenience Functions for Biscuit

Bioconductor version: 3.10

A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples, with or without imputation, dropping of mostly-NA rows, age estimates, etc.

Author: Tim Triche, Jr. [aut, cre], Wanding Zhou [aut], Ben Johnson [aut], Jacob Morrison [aut], Lyong Heo [aut]

Maintainer: "Tim Triche, Jr." <tim.triche at>

Citation (from within R, enter citation("biscuiteer")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews DNAMethylation, DataImport, MethylSeq, Software
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-3
Depends R (>= 3.6.0), biscuiteerData, bsseq
Imports readr, qualV, Matrix, impute, HDF5Array, S4Vectors, Rsamtools, data.table, Biobase, GenomicRanges, BiocGenerics, VariantAnnotation, DelayedMatrixStats, SummarizedExperiment, GenomeInfoDb, Mus.musculus, Homo.sapiens, matrixStats, rtracklayer, QDNAseq, dmrseq, methods, utils, R.utils, gtools
Suggests DSS, covr, knitr, rlang, scmeth, pkgdown, roxygen2, testthat, QDNAseq.hg19, QDNAseq.mm10
Depends On Me
Imports Me
Suggests Me
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Source Package biscuiteer_1.0.0.tar.gz
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Mac OS X 10.11 (El Capitan) biscuiteer_1.0.0.tgz
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