RcwlPipelines

DOI: 10.18129/B9.bioc.RcwlPipelines    

This is the development version of RcwlPipelines; to use it, please install the devel version of Bioconductor.

Bioinformatics pipelines based on Rcwl

Bioconductor version: Development (3.10)

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RcwlPipelines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RcwlPipelines")

 

HTML R Script Rcwl Pipelines
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Version 1.1.14
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License GPL-2
Depends R (>= 3.6), Rcwl, BiocFileCache
Imports dplyr, rappdirs, jsonlite, methods, utils, tximport
LinkingTo
Suggests testthat, knitr, rmarkdown, BiocStyle
SystemRequirements nodejs
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RcwlPipelines_1.1.14.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) RcwlPipelines_1.1.14.tgz
Source Repository git clone https://git.bioconductor.org/packages/RcwlPipelines
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcwlPipelines
Package Short Url https://bioconductor.org/packages/RcwlPipelines/
Package Downloads Report Download Stats

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